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Here is a short tutorial:

For example, if you want to get sequences upstream of genes coding for adenine transporters:
First select the checkboxes for:

After, choose the condition to which you want to limit your search:


Please select a field:

Field Explanation or Example


cdd Conserved domains



nickel ABC transporter, nickel/metallophore periplasmic binding protein


cds Coding Sequences







gene name like rhlA
product name like Mg transporter
start position
end position
strand direction


fragment Chromosome information






RefSeq accession number like NC_000913
strain information like Newman
bacteria; elusimicrobia; environmental samples
Staphylococcus aureus subsp. aureus str. Newman


gap3 Sequence information for 3 prime-UTR






start position of 3 prime-UTR
end position of 3 prime-UTR
strand direction of 3 prime-UTR
sequence of 3 prime-UTR in the same strand as the gene


gap5 Sequence information for 5 prime-UTR






start position of 5 prime-UTR
end position of 5 prime-UTR
strand direction of 5 prime-UTR
sequence of 5 prime-UTR in the same strand as the gene


operon Operon




ex:PA3479
glutamine synthetase, type I-->nitrogen regulatory protein P-II


organism Organism














+/-
spiral/rod/coccus etc
singles/pairs/chains
no/yes
no/yes
Non-halophilic/halophilic/Moderate halophilic
anaerobic/aerobic/facultative/microaerophilic
aquatic/multiple/host-associated
mesophilic/psychrophilic/thermophilic/hyperthermophilic
30-42/25-30/25-40
human/animal/plant/insect
Q fever


rna_family Family of RNA according to Rfam



cis-reg; riboswitch;


rna_known Known RNA according to Rfam





start position of RNA
end position of RNA
strand of RNA


Condition:






result_number:


Email:

your email