| Field | | Explanation or Example |
|---|
| |
|
|---|
| cdd | | Conserved domains |
|---|
| |
|
| | nickel ABC transporter, nickel/metallophore periplasmic binding protein |
| |
|
|---|
| cds | | Coding Sequences |
|---|
| |
|
| | gene name like rhlA
product name like Mg transporter
start position
end position
strand direction |
| |
|
|---|
| fragment | | Chromosome information |
|---|
| |
|
| | RefSeq accession number like NC_000913
strain information like Newman
bacteria; elusimicrobia; environmental samples
Staphylococcus aureus subsp. aureus str. Newman |
| |
|
|---|
| gap3 | | Sequence information for 3 prime-UTR |
|---|
| |
|
| | start position of 3 prime-UTR
end position of 3 prime-UTR
strand direction of 3 prime-UTR
sequence of 3 prime-UTR in the same strand as the gene |
| |
|
|---|
| gap5 | | Sequence information for 5 prime-UTR |
|---|
| |
|
| | start position of 5 prime-UTR
end position of 5 prime-UTR
strand direction of 5 prime-UTR
sequence of 5 prime-UTR in the same strand as the gene |
| |
|
|---|
| operon | | Operon |
|---|
| |
|
| | ex:PA3479
glutamine synthetase, type I-->nitrogen regulatory protein P-II |
| |
|
|---|
| organism | | Organism |
|---|
| |
|
| | +/-
spiral/rod/coccus etc
singles/pairs/chains
no/yes
no/yes
Non-halophilic/halophilic/Moderate halophilic
anaerobic/aerobic/facultative/microaerophilic
aquatic/multiple/host-associated
mesophilic/psychrophilic/thermophilic/hyperthermophilic
30-42/25-30/25-40
human/animal/plant/insect
Q fever |
| |
|
|---|
| rna_family | | Family of RNA according to Rfam |
|---|
| |
|
| | cis-reg; riboswitch; |
| |
|
|---|
| rna_known | | Known RNA according to Rfam |
|---|
| |
|
| | start position of RNA
end position of RNA
strand of RNA |