Field | | Explanation or Example |
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cdd | | Conserved domains |
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| | ex: 116891 example: pfam05377 or cd06578 or TIGR01188... name of conserved domains like HemD nickel ABC transporter, nickel/metallophore periplasmic binding protein |
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cds | | Coding sequence |
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| | protein accession like NP_038276.1 gene name like rhlA DNA sequence of gene (No information avaibale for now!!!) ex:Marme_0002 ex:Mg transporter amino acid sequence protein gi like: 326793324 start position end position, strand direction of the gene relative to chromosome |
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fragment | | Chromosome information |
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| | Refseq accession number like NC_000913 gi of Refseq accession like 158421624 length of chromosome true/false strain information like "Newman" chromosome if exist in database plasmid if exist in database GC % like 52.17 number of genes in chromosome like: 4934 total length of intergenic sequences GC % in intergenic sequences median size of intergenic sequences project id of organism according to NCBI bacteria; elusimicrobia; environmental samples Staphylococcus aureus subsp. aureus str. Newman |
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gap3 | | sequence information for 3-prime-UTR |
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| | start position of 3 prime-UTR end position of 3 prime-UTR strand direction of the corresponding gene sequence of 3 prime-UTR in the same strand as the gene size of of 3 prime-UTR |
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gap5 | | Sequence information for 5-prime-UTR |
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| | start position of 5 prime-UTR end position of 5 prime-UTR strand direction of the corresponding gene sequence of 5 prime-UTR in same strand as the gene size of 5 prime-UTR |
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operon | | Operon |
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| | CO143545(Conserved) / KO143545(Known) / PR143545 (Predicted) name of operon like virRS ex:Marme_0001, Marme_0002 arylesterase --> hypothetical protein --> peptidase |
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organism | | Organism |
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| | given Id to Organism like "3" taxonomy id according to NCBI like 224326 name of organism like Borrelia burgdorferi B31 ex:bacteria ex:spirochaetes / gammaproteobacteria/ firmicutes +/- spiral/rod/coccus etc single/pairs/chains no/yes no/yes non-halophilic/halophilic/moderate halophilic anaerobic/aerobic/facultative/microaerophilic aquatic/multiple/host-associated mesophilic/psychrophilic/thermophilic/hyperthermophilic 30-42/25-30/25-40/etc human/animal/plant/insect Q fever |
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rna_family | | Family of RNA according to Rfam |
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| | Rfam accession: RF00001 5S_rRNA 5S ribosomal RNA gene; rRNA some description |
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rna_known | | Known RNA according to Rfam |
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| | start position of RNA end position of RNA strand of RNA |